Raymond Ruff
Science TLDR
Ten-minute paper summaries for scientists and experts. Two episodes a week: Mondays feature the top-scoring paper from a curated weekly digest of T cell engager, bispecific antibody, and protein engineering literature. Fridays cover the top trending paper on PubMed — any field, whatever's catching the research community's attention that week. Hosted by Raymond Ruff, a protein scientist working in translational immunotherapeutics. Audio is generated with NotebookLM; the host prompt aims for measured scientific skepticism rather than hype. Feedback and paper suggestions: sciencetldrpod@gmail.com
Vizitează neapărat site-ul podcastului și susține-i creatorul: raymondruff.github.io
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Raymond Ruff
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Cel mai nou episod
23 oct. 2026
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Episoade
Predicting human decisions with behavioural theories and machine learning 29.07.2025 18:03
https://doi.org/10.1038/s41562-025-02267-6
Tuning antibody stability and function by rational designs of framework mutations 27.07.2025 14:28
https://doi.org/10.1080/19420862.2025.2532117
Lying increases trust in science 26.07.2025 13:08
https://doi.org/10.1007/s11186-025-09635-1
Soil and cherry bacterial communities predict flavor on coffee farms 20.06.2025 6:16
https://doi.org/10.1038/s41598-025-03665-6
What Is It Like to Be a Bat? 12.06.2025 10:43
https://www.jstor.org/stable/2183914
3 Papers on Antibody Tumor Penetration and Clearance 07.06.2025 15:19
Mixing it up a little with an episode covering 3 papers on the same topic. Antibody tumor penetration: Transport opposed by systemic and antigen-mediated clearancedoi:10.1016/j.addr.2008.04.012. A highly stable human single-domain antibody-drug conjugate exhibits superior penetration and treatment of solid tumorshttps://doi.org/10.1016/j.ymthe.2022.04.013. Influence of molecular size on tissue dis...
Why people follow rules 03.06.2025 6:50
https://doi.org/10.1038/s41562-025-02196-4
Cross-tissue multicellular coordination and its rewiring in cancer 31.05.2025 18:11
doi: 10.1038/s41586-025-09053-4
Glioblastoma-instructed astrocytes suppress tumour-specific T cell immunity 27.05.2025 13:21
https://doi.org/10.1038/s41586-025-08997-x
Deep-learning-based single-domain and multidomain protein structure prediction with D-I-TASSER 26.05.2025 11:24
https://doi.org/10.1038/s41587-025-02654-4
Patient-Specific In Vivo Gene Editing to Treat a Rare Genetic Disease 20.05.2025 12:51
DOI: 10.1056/NEJMoa2504747
Adversarial testing of global neuronal workspace and integrated information theories of consciousness 02.05.2025 9:34
https://www.nature.com/articles/s41586-025-08888-1
Immune checkpoint TIM-3 regulates microglia and Alzheimer’s disease 14.04.2025 13:17
https://doi.org/10.1038/s41586-025-08852-z
A natural experiment on the effect of herpes zoster vaccination on dementia 07.04.2025 11:50
DOI: 10.1038/s41586-025-08800-x
The end of the genetic paradigm of cancer 02.04.2025 25:31
https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3003052
Embodied large language models enable robots to complete complex tasks in unpredictable environments 30.03.2025 12:12
https://www.nature.com/articles/s42256-025-01005-x
Sequencing by Expansion (SBX) – a novel, high-throughput single-molecule sequencing technology 26.03.2025 14:10
https://www.biorxiv.org/content/10.1101/2025.02.19.639056v1
CD33–CD123 IF-THEN Gating Reduces Toxicity while Enhancing the Specificity and Memory Phenotype of AML-Targeting CAR-T Cells 19.03.2025 8:37
DOI: 10.1158/2643-3230.BCD-23-0258
AlphaFold prediction of structural ensembles of disordered proteins 21.02.2025 8:31
DOI: 10.1038/s41467-025-56572-9 Key Points: - Introduces AlphaFold-Metainference, a new method combining AlphaFold predictions with physics simulations - Notable because AlphaFold was trained on structured proteins but shows surprising accuracy with disordered ones - Validated against experimental data from 11 different disordered proteins using SAXS (small-angle X-ray scattering) - Further valida...
A second-generation M1-polarized CAR macrophage with antitumor efficacy 13.02.2025 14:03
DOI: 10.1038/s41590-023-01687-8 Key Points: - Research focuses on using engineered macrophages (CAR-iMACs) instead of typical CAR T cells to fight solid tumors - Started with iPSCs (induced pluripotent stem cells) which were differentiated into macrophages and engineered with CARs - Created two versions: - First generation with CD3ζ domain - Second generation with added TIR domain - Second generat...
Efficacy and Safety of Obinutuzumab in Active Lupus Nephritis 12.02.2025 9:56
DOI: 10.1056/NEJMoa2410965 Key Points: - Phase 3 trial testing obinutuzumab (anti-CD20 monoclonal antibody) + standard therapy vs placebo + standard therapy for lupus nephritis - Primary endpoint: Complete renal response at week 76 - Notable finding: 46.4% response with obinutuzumab vs 33.1% with placebo (13.4% improvement, p=0.02) Trial Design: - 271 adult patients with active lupus nephritis - R...
Triple knockdown of CD11a, CD49d, and PSGL1 in T cells reduces CAR-T cell toxicity but preserves activity against solid tumors in mice 10.02.2025 14:16
DOI: 10.1126/scitranslmed.adl6432 Key Points: The Research Problem: CAR-T cell therapy has been successful for blood cancers but faces challenges with solid tumors Major challenge: "On-target, off-tumor toxicity" where CAR-T cells attack healthy tissues Previous patient death case: HER2-targeted CAR-T cells attacked lung tissue due to HER2 expression on lung cells Study Focus: Target: EpCAM (epith...
Deep learning enhances the prediction of HLA class I-presented CD8+ T cell epitopes in foreign pathogens 06.02.2025 10:23
DOI: 10.1038/s42256-024-00971-y Key Topics: - New deep learning model MUNIS for predicting CD8+ T-cell epitopes - Implications for vaccine development and personalized medicine - Real-world validation using Epstein-Barr virus (EBV) Background Science: - HLAI molecules display protein fragments (epitopes) on cell surfaces - CD8+ T-cells recognize foreign epitopes to trigger immune response - Tradit...
Second-generation anti-amyloid monoclonal antibodies for Alzheimer’s disease: current landscape and future perspectives 05.02.2025 12:03
DOI: https://doi.org/10.1186/s40035-025-00465-w Key Discussion Points: 1. Overview of Current Landscape - Three FDA-approved second-generation antibodies: Aducanumab, Lecanemab, Donanemab - Lecanemab recently received traditional FDA approval - Represents validation of amyloid cascade hypothesis 2. Individual Antibody Profiles: Aducanumab - Derived from memory B cells of both healthy and cognitive...
Scratching promotes allergic inflammation and host defense via neurogenic mast cell activation 04.02.2025 20:36
DOI: 10.1126/science.adn9390 Key points: The Itch-Scratch Paradox Scratching is an evolutionarily conserved behavior but seems counterproductive as it worsens inflammation Research found scratching serves both harmful and beneficial purposes: Can exacerbate allergic skin conditions Helps protect against bacterial infections like S. aureus Provides insight into why scratching is pleasurable despite...
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