Dr. B's microbio stuff

Intro immunology based on Ch.17 of the OpenStax book https://openstax.org/books/microbiology/pages/17-introduction Crash course video on innate response: https://youtu.be/GIJK3dwCWCw?si=l0snWIZCIZSs0BTr Animation of how TLRs recognize and act on pathogens, disregard all the abbreviations of the many intermediaries and components https://youtu.be/d0fgMaQfAQw?si=TnNYKd2wSdKw2pvM Detailed video about...

Intro microbiology based on Openstax book. Episode covers basic concepts in epidemiology, morbidity/mortality, incidence, prevalence, types of epidemiology studies, reservoirs, carriers, and transmission types. Openstax chapter 16 https://openstax.org/books/microbiology/pages/16-introduction CDC Morbidity and Mortality Weekly Report https://www.cdc.gov/mmwr/index.html Contagion scene https://youtu...

Intro micro based on the Openstax book. This covers virulence factors especially toxins. Example of an exotoxin type (AB toxins): https://youtu.be/JTAOQHtClxA?si=Jkvf8S7dJ7aJ2ysE

Intro microbiology chapter 15 pathogenicity (part 1). Covers concepts related to microbial diseases, different types, signs and symptoms, Koch's postulates, pathogenicity vs virulence and ID50, stages of disease, stages of infection.

Intro microbiology lab, recap of biochemical reactions around carbohydrate metabolism: Starch agar https://www.youtube.com/watch?v=FEf_ecmD_Uk&t=1s OF medium https://www.youtube.com/watch?v=ofiBrGIzY7w Phenol Red broths https://www.youtube.com/watch?v=msDezRcixKg&t=2s MRVP https://www.youtube.com/watch?v=JxmrPar5qzI Simmons citrate https://www.youtube.com/watch?v=LZ_mVPRLayQ&t=1s

Intro microbiology chapter 14. Covers mechanisms of action of antibiotics, major groups, as well as resistance mechanisms. Openstax chapter :https://openstax.org/books/microbiology/pages/14-2-fundamentals-of-antimicrobial-chemotherapy Video how showing how antibiotics inhibit protein synthesis: https://youtu.be/RedO6rLNQ2o?si=zhE94YPyCmq18q52 Evolution of antibiotic resistance in real life: https:...

Intro microbiology chapter 13. Covers BSL levels, types of microbial control, brief intro to physical and chemical methods. Openstax book chapter link: https://openstax.org/books/microbiology/pages/13-introduction Summary of disinfectants: https://www.cfsph.iastate.edu/Disinfection/Assets/characteristics-of-selected-disinfectants.pdf Video about how to evaluate disinfectants on surfaces https://yo...

Openstax ch.11 https://openstax.org/books/microbiology/pages/11-4-protein-synthesis-translation Cult classic from the 1970s: Stanford students visualize translation https://youtu.be/u9dhO0iCLww?si=ALRdY13skRNheR3o More modern version: https://youtu.be/41_Ne5mS2ls?si=H9K-6RatTWnxbJm2 More advanced one: https://youtu.be/TfYf_rPWUdY?si=rfN_eK6zTaz5R1cx Another animation: https://youtu.be/2dV5s6v2v8Q?...

Openstax ch.11 https://openstax.org/books/microbiology/pages/11-introduction Simpler DNA replication https://youtu.be/TNKWgcFPHqw?si=iKA-HkSMTkgpEtjZ DNA replication https://youtu.be/4jtmOZaIvS0?si=vd-ZVUusT1e2E3KT Transcription and translation https://youtu.be/41_Ne5mS2ls?si=U8SS_tdzOAgt3k4F

Ch.10 Openstax: https://openstax.org/books/microbiology/pages/14-2-fundamentals-of-antimicrobial-chemotherapy Watson shows base pairing: https://youtu.be/PDeaLxoL75M?si=CeHpaXdSxKdg0fU2 If you thought genomics was boring, the genomics of beer: https://youtu.be/VmxdU-M0eXY?si=ZM6k6Xwv7BxrSPPY DNA/RNA structure video: https://youtu.be/nuC1_jiqq5g?si=k2ssReTA4wvUiiCd

Openstax chapter https://openstax.org/books/microbiology/pages/9-introduction Recap of serial dilutions https://youtu.be/l8HgDPajsMI?si=i0Ci3ttcpY4Umbuk Timelapse of bacterial growth https://youtu.be/XLmk0zYIFjE?si=1CtntArben22eJWa

Openstax chapter https://openstax.org/books/microbiology/pages/8-introduction Oxidation & reduction video https://learn.genetics.utah.edu/content/metabolism/carbon Metabolic pathways interactive https://learn.genetics.utah.edu/content/metabolism/pathways/ Glycolysis with music https://youtu.be/6JGXayUyNVw?si=_mER382t3mRBlwm4 Cheese and microbes https://youtu.be/9krRP2aSewo?si=vOQzWzzXqw9Qxrl-...

Sorry it is a long one! Openstax chapter 8: https://openstax.org/books/microbiology/pages/8-1-energy-matter-and-enzymes Rap song about redox stuff: https://youtu.be/VCpNk92uswY?si=aIy97qYRdR0AI6ve How enzymes work https://youtu.be/yk14dOOvwMk?si=BMZgIIDsHA4XSoN3

Openstax chapter: https://openstax.org/books/microbiology/pages/6-introduction Cool animation of a bacteriophage infection: https://youtu.be/uFXuxGuT7H8?si=QiFJPQFQ5SzomlnJ HIV & reverse transcriptase: https://youtu.be/PlSvywlLuNw?si=1qZZA_7oVHl0HYHw Covid virus infection: https://youtu.be/LoVJCx6XXMM?si=LNk2HZIxGAGK7UjN Infectious encephalitis (including measles): https://youtu.be/unleaXRtsC0...

Openstax book https://openstax.org/books/microbiology/pages/5-introduction Candida auris https://youtu.be/jw8TB4jw-jM?si=4wgtjbHItDm7hf86

Tough mudder and Aeromonas infection https://news.yahoo.com/tough-mudder-near-san-francisco-022410696.html Aeromonas is an enteric btw https://en.wikipedia.org/wiki/Aeromonas Here is Conan the bacterium: https://www.smithsonianmag.com/smart-news/conan-the-bacterium-has-what-it-takes-to-survive-on-mars-180981019/

The first couple of weeks of micro lab may feel overwhelming with so many new techniques and lots of information. Dr. B puts it in the context of "real life" especially as related to clinical lab and health care.

Cool clip of the inside of a cell https://youtu.be/wJyUtbn0O5Y?si=It07OzeTMnrcMFhz Flagella, pili, and fimbriae https://youtu.be/VzqC7nag6KM?si=1aoHq31RLff2ChcO This is a cool video about modern day endosymbionts with some amazing live microscopy of amoebas https://youtu.be/4LhBZ2H5SwM?si=bCIHPjzext8UIGje

Ch.3 of Openstax: https://openstax.org/books/microbiology/pages/3-introduction Cool interactive for cells https://learn.genetics.utah.edu/content/cells/insideacell20/ Intro to plasmids (they can be used as tools of genetic engineering) https://youtu.be/SdqJFA6mOkI?si=ro8jXgtgtNVPfbXg Endospores in the food industry: https://youtu.be/L9uAf9Bsmvg?si=5vTKw6Pfv-5j9J50

Openstax book chapter 7: https://openstax.org/books/microbiology/pages/7-introduction How gamers can help figuring out the 3-d structure of a protein: https://www.youtube.com/watch?v=axN0xdhznhY&list=PLCB386EB2B4D1097A&index=13

Opnestax appendix about chemistry: https://openstax.org/books/microbiology/pages/a-fundamentals-of-physics-and-chemistry-important-to-microbiology NaCl bonding song: https://youtu.be/ljvX-RMv_lw?si=yoV6RwhIjlWI3aBn TEAS test prep chemistry video: https://youtu.be/j9rLiSLIsh4?si=4Gl9FmiVBAywprGo Same TEAS series but with chemistry questions: https://youtu.be/B3_nogbF8ZM?si=j4qsi_O5Ap5dSWND

Chapter 2 of Openstax book: https://openstax.org/books/microbiology/pages/2-introduction Cell size and scale https://learn.genetics.utah.edu/content/cells/scale/ Virtual microscope https://learn.genetics.utah.edu/content/cells/microscope Intro to electromagnetic spectra https://youtu.be/lwfJPc-rSXw?si=tyklygzUV3cDsTFI Preparing smears https://youtu.be/OrSmJst_lPM?si=iqurYByQ70SSuEx9

Tiny Earth website: https://tinyearth.wisc.edu/ Intro video for TE: https://youtu.be/fZtjAfEUHyo?si=gWZUqQu8IcOoaObL Soil sampling: https://youtu.be/4KlKQT9YGL8?si=vnwzMskq73I4ous6 Screening for antibiotic production https://youtu.be/MKRRkrad6K8?si=y5G6P44IWiOwU_jt More such videos at TE Instructional In 2017, NU students got a honorary mention for this video: https://youtu.be/HIxA356o-jU?si=EoV5f...

Taxonomy 101, microbial groups. Openstax chapter 1 https://openstax.org/books/microbiology/pages/1-3-types-of-microorganisms

Intro to microbiology: brief history and types of microbiology. Openstax chapter 1: https://openstax.org/books/microbiology/pages/1-introduction Like cheese? Here is a cool video about how microbes contribute to cheese (in a good and bad way): https://youtu.be/9krRP2aSewo?si=hzBer-ilH2EpzRAM History of microscope: https://youtu.be/TJyOQmdwHhE?si=ZDiWeASukVUJQBRZ Mrs. Fleming dr. Voureka https://en...