Gene Pooling

[AA] Providing an issue to CoPilot and merging PR Video 13.10.2025 ↓

In Episode three we show you how to take a GitHub issue – delegate to CoPilot, AND revise the action it took. Then we merge the pull request to the main branch. All on the web. Here a markdown file was edited and two PDFs were downloaded and added to repo. Difficulty: 1/5 🙂 #aa

[AA] OpenAI Codex on web Video 12.10.2025 ↓

Episode 02: Here we explore the OpenAI Codex tool that can work in a similar matter of what we saw with GitHub Co-pilot on the web. Coding changes can be requested and then a pull request can be made. If in fact you and your team is satisfied with the changes the pull request can […]

ConTra – Our First Vibe Session ! [Video Highlights] Video 23.08.2025 ↓

The team discussed running and testing a Python package for contex dependence analysis, with successful installation and demonstration of its output capabilities for generating HTML reports. They explored various aspects of gene expression data analysis, including correlations between different molecular types and the limitations of their current model in handling genomic data. The team also [&#82...

Hot Dogs, Clams, and the Science of Connection 08.07.2025 ↓

Read more at https://genefish.wordpress.com/2025/07/08/tank-maintenance-rna-and-bbqs/

VIMS Day 4 – Ph Strip for Energy Use 07.07.2025 ↓

This post details the resazurin trials conducted at VIMS on Day 4 with C. virginica oyster families. The primary goal of these trials is to test whether metabolic rate corresponds to oyster performance once they are outplanted into the field, by correlating resazurin data with predicted and observed performance values. Here’s a summary of the key aspects from the […]