tv.qiagenbioinformatics.com

In this video, we demonstrate how to view details of specific data points in plot views using the synchronized table view. See how you can easily access the list of genes that overlap in a Venn diagram for RNA-seq. This functionality is also available for other types of plots like track lists, expression browsers and volcano plots, to name a few.

Starting with CLC version 26, workflow control can be simplified using fork collections. https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Fork.html#SECTION001425230000000000000

In this 90-minute training using Inflammatory Bowel Disease (IBD) public data from NCBI GEO through Omicsoft DiseaseLand, attendees will learn how to: • Rapidly query and identify public datasets that fit our search criteria • Discover and validate biomarker expression in disease tissue, different treatments, and response groups • Identify a list of biomarkers specific to responders vs non-respond...

In three separate 60-minute trainings, attendees will learn how to use basic expression analysis functionalities in QIAGEN OmicSoft OncoLand, DiseaseLand and OmicSoft Studio. QIAGEN OmicSoft Single Cell Land will also be discussed in OncoLand and DiseaseLand trainings, focusing on public single-cell data. Day 2: Biomarker discovery with QIAGEN OmicSoft DiseaseLand Leverage DiseaseLand’s repositori...

Single-cell gene expression analysis starting from either FASTQ or expression data is now supported by QIAGEN CLC Genomics Workbench Premium, the scalable cross-platform desktop software for NGS data analysis. In this webinar, we will re-analyze data from a study on transcriptional profiling of the mouse heart (Skelly et al., 2018), starting from FASTQ and ending with detecting sexually dimorphic...

For your RNA-seq data, you will learn how to: • Import FASTQ files, cell matrix files and metadata • Download and/or import reference and annotations files • Map reads to a reference genome • Generate gene and transcript counts • QC reports displaying % mapped reads etc. • Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, Sankey pl...

Disease pathogenesis is often context-dependent, specifically on tissue expression profiles within a given disease context. However, tissue expression profile of drug targets or potential targets is often difficult to ascertain. In this webinar, we will dive deep into the wealth of available deeply curated high quality ‘omics data (RNA-seq, scRNA-seq and more) in the OmicSoft Lands database using...

In today’s session, we’ll explore the major enhancements to the workflow system that greatly improve usability, flexibility, and authoring efficiency. We’ll look at new grouping and branching features that simplify complex workflow design, updated editor tools that make navigation and validation easier, and improvements that streamline adding, managing, and reusing workflow components. We’ll also...

Are you new to QIAGEN Ingenuity Pathway Analysis (IPA) or interested in expanding your skill set? Join us as we learn more on large dataset analysis and knowledge base queries using QIAGEN IPA. You’ll learn to: • Upload multiple dataset types (e.g., RNA-seq, proteomics, metabolomics) and perform interactive core/pathway analysis in IPA • Learn how to interpret different results, including pathways...

In three separate 60-minute trainings, attendees will learn how to use basic expression analysis functionalities in QIAGEN OmicSoft OncoLand, DiseaseLand and OmicSoft Studio. QIAGEN OmicSoft Single Cell Land will also be discussed in OncoLand and DiseaseLand trainings, focusing on public single-cell data. Day 1: Biomarker discovery with QIAGEN OmicSoft OncoLand Leverage public oncology data from G...

In this video, Shawn Prince, Ph. D takes you through the advanced features of QIAGEN OmicSoft with customer use cases

As ‘omics datasets grow in size and complexity, automation becomes essential for efficient data interpretation. QIAGEN Ingenuity Pathway Analysis (IPA) is mainly accessed through its desktop client, but it has APIs – powerful tools that enable programmatic access to IPA’s functionalities. Explore seamless integration of IPA into your bioinformatics pipelines, automate repetitive tasks and scale yo...

Discovery of new genes implicated in hereditary diseases or cancer progression is challenging and advancing rapidly with an increase in the amount of cohort data to analyze from next generation sequencing (NGS) data to associations between gene variants and diseases, and finally to biological mechanisms of these gene variants. Combining QIAGEN CLC Genomics Workbench, QCII-T, and IPA, scientists ca...

Explore how QIAGEN Ingenuity Pathway Analysis (IPA) can accelerate bioengineering research by powering insights into molecular mechanisms, signaling pathways and gene networks. Whether you are working on synthetic biology, tissue engineering or biomaterials, IPA helps translate ‘omics data into actionable biological understanding. See how you can use IPA to design experiments, interpret complex da...

Accelerate discovery by transforming how your team collaborates with QIAGEN Ingenuity Pathway Analysis (IPA). You already know that IPA helps scientists rapidly interpret the causal biology behind their data—identifying upstream regulators, pathways, and mechanistic networks with ease. In this 45-minute vision-generating session, we’ll demonstrate how enterprise-level features in IPA can help your...

Join us for a 90-minute training session for new users of QIAGEN IPA. Users will learn how to: • Upload their dataset (RNA-seq, scRNA-seq, proteomics, metabolomics and more) and perform interactive core/pathway analysis in IPA • Understand the different result types produced (pathways, key regulators, impact on biological functions/diseases and more) • Compare different experimental conditions (tr...

As requested by many users, your QIAGEN Digital Insights team is excited to introduce QIAGEN Ingenuity Pathway Analysis (IPA) deep-dive trainings. In these three-hour training sessions, we will discuss the following topics: Part 1: Deep dive into QIAGEN IPA core and comparison analyses Part 2: Deeper dive into how to use QIAGEN IPA even without user data

There is an almost incomprehensible amount of diverse, non-standardized ‘omics data deposited in different public sources such as GEO, SRA, TCGA, GTEx and others. Scientists who are interested in biomarker discovery and investigation using such data run into the challenge of finding time and resources to locate studies of their interest and then making it usable by cleaning and standardizing these...

Discover how QIAGEN Ingenuity Pathway Analysis (IPA) and OmicSoft Studio empower researchers to uncover hidden synergies within their existing drug portfolios. Whether you're exploring new indications or repurposing known compounds, these tools provide a data-driven framework to accelerate discovery and reduce development costs. Learn how to: • Diagram their current pipeline of drugs, targets and...

This hands-on workshop will cover a highly requested use case using OmicSoft Explorer and IPA Interpret, two new features that QIAGEN IPA* and OmicSoft customers can now access. Specifically, the trainer will go over how to: • Easily search for deeply curated high-quality 'omics datasets (RNA-seq, scRNA-seq, etc.) based on user-defined criteria (disease name, drug treatment, etc.) curated from sou...

In this webinar, the speaker will go over how to: • Identify critical pathways and networks in your single cell data, giving you insight into biological mechanisms • Discover novel regulators, master regulators and biomarkers associated with different cell types • Compare different cell clusters through pathways/networks activity heatmap to understand differences between your cell types or experim...

Pre-clinical toxicology studies generate complex datasets that require robust interpretation to identify potential safety liabilities early in drug development. QIAGEN Ingenuity Pathway Analysis (IPA) can help uncover mechanistic insights, predict toxicity outcomes and support decision-making in pre-clinical safety assessments. Explore how you can apply IPA to ‘omics data to identify toxicity sign...

Are you new to QIAGEN Ingenuity Pathway Analysis (IPA) or interested in expanding your skill set? Join us as we learn more on large dataset analysis and knowledge base queries using QIAGEN IPA. You’ll learn to: • Upload multiple dataset types (e.g., RNA-seq, proteomics, metabolomics) and perform interactive core/pathway analysis in IPA • Learn how to interpret different results, including pathways...